Make bibtex references for vignettes

Make bibtex references for vignettes

Usage

makeVignetteReference(package, vig = 1, verbose = TRUE, title, author, 
                      type = "pdf", bibtype = "Article", key = NULL)

vigbib(package, verbose = TRUE, ..., vig = NULL)

Arguments

package

a character string, the name of an installed package.

vig

an integer number or a character string identifying a vignette.

verbose

if TRUE, print the references in Bibtex format.

title

a character string, title of the vignette, see Details.

author

a character string, title of the vignette, see Details.

type

a character string, type of the vignette, such as "pdf" or "html". Currently ignored.

bibtype

a character string, Bibtex type for the reference, defaults to "Article".

key

a character string specifying a key for the Bibtex entry. If missing, suitable key is generated automatically.

...

arguments passed by vigbib() to makeVignetteReference().

Details

vigbib() generates Bibtex references for all vignettes in a package. makeVignetteReference() produces a Bibtex entry for a particular vignette.

There seems to be no standard way to cite vignettes in R packages. For vignettes that are complete journal papers (most notably in the Journal of Statistical Software), the authors would usually prefer the papers to be cited, rather than the vignette. In any case, consulting the output of citation("a_package") is the best starting point. If the vignette has been extended substantially after the paper was published, cite both.

In many cases it is sufficient to give the command that opens the vignette, e.g.:

vignette("Inserting_bibtex_references", package = "Rdpack").

makeVignetteReference() makes a Bibtex entry for one vignette. It looks for the available vignettes using vignette(package=package). Argument vig can be a character string identifying the vignette by the name that would be used in a call to vignette(). It can also be an integer, identifying the vignette by the index (in the order in which the vignettes are returned by vignette()). By default the first vignette is returned. If vig is not suitable, a suitable list of alternatives is printed.

For vigbib() it is sufficient to give the name of a package. It accepts all arguments of makeVignetteReference() except vig (actually, supplying vig is equivallent to calling makeVignetteReference() directly).

The remaining arguments can be used to overwrite some automatically generated entries. For example, the vignette authors may not be the same as the package authors.

Value

a bibentry object containing the generated references (the Bibtex entries are also printed, so that they can be copied to a bib file)

Author

Georgi N. Boshnakov

Examples

## NOTE (2020-01-21): the following examples work fine, but are not
##   rendered correctly by pkgdown::build_site(), so there may be errors
##   on the site produced by it, https://geobosh.github.io/Rdpack/.

vigbib("Rdpack")
#> No vignettes found in package  Rdpack 
#> bibentry()
makeVignetteReference("Rdpack", vig = 1)
#> Error in makeVignetteReference("Rdpack", vig = 1): not ready yet, should return all vigs in the package.
makeVignetteReference("Rdpack", vig = "Inserting_bibtex_references")
#> Error in makeVignetteReference("Rdpack", vig = "Inserting_bibtex_references"): 'vig' must (partially) match one of:
#> 	1 
#> 
#> 	0 
#> Alternatively, 'vig' can be the index printed in front of the name above.
## the first few characters of the name suffice:
makeVignetteReference("Rdpack", vig = "Inserting_bib")
#> Error in makeVignetteReference("Rdpack", vig = "Inserting_bib"): 'vig' must (partially) match one of:
#> 	1 
#> 
#> 	0 
#> Alternatively, 'vig' can be the index printed in front of the name above.

## this gives an error but also prints the available vignettes:
## makeVignetteReference("Matrix", vig = "NoSuchVignette")

vigbib("utils")
#> @Article{vigutils:Sweave,
#>   title = {Sweave User Manual},
#>   author = {R Core Team and contributors worldwide},
#>   journal = {URL https://CRAN.R-Project.org. Vignette included in R package utils (Part of R 4.4.2)},
#>   year = {2024},
#>   publisher = {CRAN},
#>   url = {https://CRAN.R-Project.org},
#> }
makeVignetteReference("utils", vig = 1)
#> @Article{vigutils:Sweave,
#>   title = {Sweave User Manual},
#>   author = {R Core Team and contributors worldwide},
#>   journal = {URL https://CRAN.R-Project.org. Vignette included in R package utils (Part of R 4.4.2)},
#>   year = {2024},
#>   publisher = {CRAN},
#>   url = {https://CRAN.R-Project.org},
#> }
#> 
#> Team RC, worldwide c (2024). “Sweave User Manual.” _URL
#> https://CRAN.R-Project.org. Vignette included in R package utils (Part
#> of R 4.4.2)_. <https://CRAN.R-Project.org>.
## commented out since can be slow:
## high <- installed.packages(priority = "high")
## highbib <- lapply(rownames(high), function(x) try(Rdpack:::vigbib(x, verbose = FALSE)))